Tackling the active antibiotic-resistant bacteria in soils

Soils are critical reservoirs of antibiotic-resistance genes (ARGs) and antibiotic-resistant bacteria (ARB), serving as interfaces among human, animal, plant, and environmental microbiomes. While many studies have profiled soil ARGs, most rely on DNA-based methods that cannot distinguish total from metabolically active ARB, limiting risk assessment and mitigation. This review outlines soil ARG sources, their mobility, and potential transmission to plants and the food chain. We highlight advances in community- and single-cell-level approaches for characterizing active ARB and explore emerging mitigation strategies such as advanced waste treatment and bioremediation. This review aims to bridge the gap between ARG pollution and its risk mitigation, contributing to a comprehensive framework for tackling active ARB in soils.