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Machine learning-based disulfidptosis-related lncRNA signature predicts prognosis, immune infiltration and drug sensitivity in hepatocellular carcinoma

  • Lei Pu
  • , Yan Sun
  • , Cheng Pu
  • , Xiaoyan Zhang
  • , Dong Wang
  • , Xingning Liu
  • , Pin Guo
  • , Bing Wang*
  • , Liang Xue*
  • , Peng Sun*
  • *Corresponding author for this work
  • East China Normal University
  • Shandong Vocational Animal Science and Veterinary College
  • Shanghai University of Sport
  • Jiangsu Vocational Institute of Architectural Technology
  • Fudan University
  • Zhejiang Institute of Sports Science

Research output: Contribution to journalArticlepeer-review

Abstract

Disulfidptosis a new cell death mode, which can cause the death of Hepatocellular Carcinoma (HCC) cells. However, the significance of disulfidptosis-related Long non-coding RNAs (DRLs) in the prognosis and immunotherapy of HCC remains unclear. Based on The Cancer Genome Atlas (TCGA) database, we used Least Absolute Shrinkage and Selection Operator (LASSO) and Cox regression model to construct DRL Prognostic Signature (DRLPS)-based risk scores and performed Gene Expression Omnibus outside validation. Survival analysis was performed and a nomogram was constructed. Moreover, we performed functional enrichment annotation, immune infiltration and drug sensitivity analyses. Five DRLs (AL590705.3, AC072054.1, AC069307.1, AC107959.3 and ZNF232-AS1) were identified to construct prognostic signature. DRLPS-based risk scores exhibited better predictive efficacy of survival than conventional clinical features. The nomogram showed high congruence between the predicted survival and observed survival. Gene set were mainly enriched in cell proliferation, differentiation and growth function related pathways. Immune cell infiltration in the low-risk group was significantly higher than that in the high-risk group. Additionally, the high-risk group exhibited higher sensitivity to Afatinib, Fulvestrant, Gefitinib, Osimertinib, Sapitinib, and Taselisib. In conclusion, our study highlighted the potential utility of the constructed DRLPS in the prognosis prediction of HCC patients, which demonstrated promising clinical application value.

Original languageEnglish
Article number4354
JournalScientific Reports
Volume14
Issue number1
DOIs
StatePublished - Dec 2024

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

  1. SDG 3 - Good Health and Well-being
    SDG 3 Good Health and Well-being

Keywords

  • Disulfidptosis
  • Hepatocellular carcinoma cells
  • Immune microenvironment
  • LncRNA
  • Prognostic signature

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