BioSankey: Visualization of Microbial Communities Over Time

  • Alexander Platzer
  • , Julia Polzin
  • , Klaus Rembart
  • , Ping Penny Han
  • , Denise Rauer
  • , Thomas Nussbaumer

Research output: Contribution to journalArticlepeer-review

12 Scopus citations

Abstract

Metagenomics provides quantitative measurements for microbial species over time. To obtain a global overview of an experiment and to explore the full potential of a given dataset, intuitive and interactive visualization tools are needed. Therefore, we established BioSankey to visualize microbial species in microbiome studies over time as a Sankey diagram. These diagrams are embedded into a project-specific webpage which depends only on JavaScript and Google API to allow searches of interesting species without requiring a web server or connection to a database. BioSankey is a valuable tool to visualize different data elements from single or dual RNA-seq datasets and additionally enables a straightforward exchange of results among collaboration partners.

Original languageEnglish
JournalJournal of integrative bioinformatics
Volume15
Issue number4
DOIs
StatePublished - 13 Jun 2018
Externally publishedYes

Keywords

  • gene expression
  • html
  • microbiome
  • sankey
  • visualization

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